Jatropha Genome Database

JcSR397681f.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcSR397681f.10 - phase: 1 /partial
         (122 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29713.m000178 acyl-CoA oxidase, putative                              233   2e-62

>29713.m000178 acyl-CoA oxidase, putative
          Length = 235

 Score =  233 bits (593), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 109/114 (95%), Positives = 113/114 (99%)

Query: 1   EGEDHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKSLGSFGAWNRCLNHLLTLAESHVE 60
           EGE+HLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSK+LGSFGAWNRCLNHLLTLAESH+E
Sbjct: 71  EGEEHLRDPKFQLDAFRYRTSRLLQSVAVRLRKHSKTLGSFGAWNRCLNHLLTLAESHIE 130

Query: 61  SVILAKFIEAVQNCPDASSRAALKLVCDLYALDRIWNDIGTYRNVDYVAPNKAK 114
           SVILAKFIEAVQNCPD SSRAALKLVCDLYALDRIW+DIGTYRNVDYVAPNKAK
Sbjct: 131 SVILAKFIEAVQNCPDPSSRAALKLVCDLYALDRIWSDIGTYRNVDYVAPNKAK 184