Jatropha Genome Database

JcPR04JCLS5.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR04JCLS5.10 + phase: 1 /pseudo/partial
         (124 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014165 Myosin heavy chain, striated muscle, putative           205   3e-54

>30170.m014165 Myosin heavy chain, striated muscle, putative
          Length = 1041

 Score =  205 bits (522), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 106/114 (92%), Gaps = 1/114 (0%)

Query: 1   EINSPDCIDKVALPENKVLQRDCSGERYQNGCAHISSPTSNPEVPDDGNLVSGYGSNTTL 60
           EINS DCIDKVALPENKVLQRD SGE YQN CAHISSPTSNPEVPDDG+LVSGYGSNTTL
Sbjct: 692 EINSSDCIDKVALPENKVLQRDSSGESYQNSCAHISSPTSNPEVPDDGSLVSGYGSNTTL 751

Query: 61  CKVSLEEFEELKTEKDNMAMDLARCTENLEMTKSQLHETEQLLARSLKLQLTSA 114
           CKVSLEEFEELK+EK+N+A+DLARCTENLEMTKSQLHETEQLLA + K QL SA
Sbjct: 752 CKVSLEEFEELKSEKNNVALDLARCTENLEMTKSQLHETEQLLAEA-KSQLASA 804