Jatropha Genome Database

JcPR03EVQAR.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR03EVQAR.10 + phase: 0 /partial/short
         (46 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008849 beta-tubulin cofactor d, putative                        74   1e-14

>30174.m008849 beta-tubulin cofactor d, putative
          Length = 1260

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/37 (91%), Positives = 35/37 (94%)

Query: 6   FFSFIEWTHEVLSSGTDDVMSHFRLLGVVEALAAIFK 42
           F SF EWTHEVLSSGTDDVMSHF+LLGVVEALAAIFK
Sbjct: 244 FTSFTEWTHEVLSSGTDDVMSHFQLLGVVEALAAIFK 280