Jatropha Genome Database

JcPR03AIW3S.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR03AIW3S.10 - phase: 1 /partial
         (90 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007139 arginine decarboxylase, putative                        126   2e-30

>30131.m007139 arginine decarboxylase, putative
          Length = 724

 Score =  126 bits (317), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/89 (70%), Positives = 69/89 (77%), Gaps = 1/89 (1%)

Query: 2   IVSHHSILIFEXXXXXXXXXXXXXXXX-GFQYFVDGLTEDAISDYRNLTSAAMRGENDTC 60
           IVSHHS+LIFE                 GFQY ++GL E+AISDYRNLT+AA+RGE DTC
Sbjct: 398 IVSHHSVLIFEAVSSSVVSSAAASMTSAGFQYLMEGLAEEAISDYRNLTAAAVRGEYDTC 457

Query: 61  LLYADQLKQRCVDQFKEGSIGMEQLAAVD 89
           LLYADQLKQRCVDQFKEGSIGMEQLAAVD
Sbjct: 458 LLYADQLKQRCVDQFKEGSIGMEQLAAVD 486