Jatropha Genome Database

JcPR03AHRQV.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR03AHRQV.10 - phase: 0 /partial
         (73 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011101 homeobox protein knotted-1, putative                     96   5e-21
29848.m004577 homeobox protein knotted-1, putative                     73   3e-14
29737.m001270 homeobox protein knotted-1, putative                     65   7e-12

>30190.m011101 homeobox protein knotted-1, putative
          Length = 302

 Score = 95.5 bits (236), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 45/48 (93%), Positives = 47/48 (97%)

Query: 26 DQTRQLKADIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQSHH 73
          DQTRQLKA+IA HPLYEQLL+AHVSCLRVATPIDQLPLIDAQLSQSHH
Sbjct: 36 DQTRQLKAEIANHPLYEQLLSAHVSCLRVATPIDQLPLIDAQLSQSHH 83


>29848.m004577 homeobox protein knotted-1, putative
          Length = 456

 Score = 72.8 bits (177), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 32/47 (68%), Positives = 41/47 (87%)

Query: 27  QTRQLKADIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQSHH 73
           Q  + KA+I +HPLY+QLL+AHV+CLR+ATP+DQLP IDAQL+QS H
Sbjct: 162 QNARYKAEILSHPLYDQLLSAHVACLRIATPVDQLPRIDAQLAQSQH 208


>29737.m001270 homeobox protein knotted-1, putative
          Length = 374

 Score = 65.1 bits (157), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/41 (73%), Positives = 35/41 (85%)

Query: 32  KADIATHPLYEQLLAAHVSCLRVATPIDQLPLIDAQLSQSH 72
           KA+I  HPLYEQLLAAHV+CLR+ATP+DQL  ID QL+QS 
Sbjct: 78  KAEILGHPLYEQLLAAHVACLRIATPVDQLARIDTQLAQSQ 118