Jatropha Genome Database

JcPR02IGLIS.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcPR02IGLIS.10 + phase: 0 /pseudo/partial
         (164 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29883.m001967 cyclophilin, putative                                    93   7e-20
29848.m004663 peptidyl-prolyl cis-trans isomerase, putative            60   3e-10

>29883.m001967 cyclophilin, putative
          Length = 688

 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 60/87 (68%), Gaps = 16/87 (18%)

Query: 35  PKKVYRSPRFRGDSRSPSRKSGELSQGRSQRSPPDNLVHKAPETSNSNHGRELSRSRSPN 94
           P+ V R+PR R DSRSP+RKSG                H+APE S SNH + LSRS S +
Sbjct: 451 PENVPRNPRLRSDSRSPARKSG----------------HRAPEASRSNHDQRLSRSPSSD 494

Query: 95  GTPQRVRKGRGFTERYSFARRYRTPSP 121
           G P+RVRKGRGFT+RYSFARRYRTPSP
Sbjct: 495 GAPKRVRKGRGFTDRYSFARRYRTPSP 521


>29848.m004663 peptidyl-prolyl cis-trans isomerase, putative
          Length = 729

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/37 (72%), Positives = 35/37 (94%)

Query: 85  RELSRSRSPNGTPQRVRKGRGFTERYSFARRYRTPSP 121
           R LSRS SP+G+P+R+R+GRGF++RYS+ARRYRTPSP
Sbjct: 547 RSLSRSVSPDGSPKRIRRGRGFSDRYSYARRYRTPSP 583