Jatropha Genome Database

JcCD0179138.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0179138.10 + phase: 1 /pseudo/partial
         (194 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29773.m000286 formate-tetrahydrofolate ligase, putative               248   2e-66
29773.m000288 methylenetetrahydrofolate dehydrogenase, putative       244   2e-65
29121.m000032 methylenetetrahydrofolate dehydrogenase, putative       113   5e-26

>29773.m000286 formate-tetrahydrofolate ligase, putative
          Length = 415

 Score =  248 bits (632), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 120/138 (86%), Positives = 125/138 (90%)

Query: 14  GPGGFVVTEAGFGADIGTEKFMNIKCRYSGLMPQCAIIVATIRALKMHGGGPEVVAGRPL 73
           GPGGFVVTEAGFGADIGTEKFMNIKCRYSGL+PQCAIIVATIRALKMHGGGPEVVAG+PL
Sbjct: 140 GPGGFVVTEAGFGADIGTEKFMNIKCRYSGLVPQCAIIVATIRALKMHGGGPEVVAGKPL 199

Query: 74  DHAYTTENVPLVEAGCVNLARHISNTKSYGVNVVVAVNMFSTDTEAELSAVKNXXXXXXX 133
           D AYTTENV LVEAGCVNLARHISNTK+YGVNVVVAVNMFSTD+EAEL+AVKN       
Sbjct: 200 DRAYTTENVALVEAGCVNLARHISNTKAYGVNVVVAVNMFSTDSEAELNAVKNAALAAGA 259

Query: 134 XXXVVCTHHAHGGKGAVS 151
              VVCTHHAHGGKGAV 
Sbjct: 260 FDAVVCTHHAHGGKGAVD 277


>29773.m000288 methylenetetrahydrofolate dehydrogenase, putative
          Length = 347

 Score =  244 bits (623), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 118/138 (85%), Positives = 123/138 (89%)

Query: 14  GPGGFVVTEAGFGADIGTEKFMNIKCRYSGLMPQCAIIVATIRALKMHGGGPEVVAGRPL 73
           GPGGFVVTEAGFGADIGTEKFMNIKCRYSGL+PQCAIIVATIRALKMHGGGPEVVAG+PL
Sbjct: 72  GPGGFVVTEAGFGADIGTEKFMNIKCRYSGLVPQCAIIVATIRALKMHGGGPEVVAGKPL 131

Query: 74  DHAYTTENVPLVEAGCVNLARHISNTKSYGVNVVVAVNMFSTDTEAELSAVKNXXXXXXX 133
           D AYTTENV LVEAGCVNLARHIS TK+Y VNVVVAVNMFSTD+EAEL+AVKN       
Sbjct: 132 DRAYTTENVALVEAGCVNLARHISKTKAYSVNVVVAVNMFSTDSEAELNAVKNAALAAGA 191

Query: 134 XXXVVCTHHAHGGKGAVS 151
              VVCTHHAHGGKGAV 
Sbjct: 192 FDAVVCTHHAHGGKGAVD 209


>29121.m000032 methylenetetrahydrofolate dehydrogenase, putative
          Length = 342

 Score =  113 bits (283), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 74/110 (67%), Gaps = 9/110 (8%)

Query: 16  GGFVVTEAGFGADIGTEKFMNIKCRYSGLMPQCAIIVATIRALKMHGGGPEVVAGRPLDH 75
           G + VTEAGFGAD+G EKF++IKCR SGL P   ++VATIRALKMHGG P+         
Sbjct: 78  GDYAVTEAGFGADLGAEKFIDIKCRMSGLRPAAVVLVATIRALKMHGGVPKA-------- 129

Query: 76  AYTTENVPLVEAGCVNLARHISNTKS-YGVNVVVAVNMFSTDTEAELSAV 124
              TENV  V  G  NL +H++N +  YG+ VVVA+N F  DT+AEL AV
Sbjct: 130 NLATENVQAVVDGLPNLDKHLANIQDVYGLPVVVAINKFPLDTDAELQAV 179