Jatropha Genome Database

JcCD0162764.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0162764.10 + phase: 1 /partial/short
         (47 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006006 Endoplasmic reticulum-Golgi intermediate compartme...    89   4e-19

>29908.m006006 Endoplasmic reticulum-Golgi intermediate
          compartment protein, putative
          Length = 386

 Score = 89.0 bits (219), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/47 (87%), Positives = 46/47 (97%)

Query: 1  MEGMMSKLRSLDAYPKINEDFYSRTFSGGVITIASSIVMLLLFISEL 47
          MEG+M+KLR+LDAYPKINEDFYSRT SGGVIT+ASSI+MLLLFISEL
Sbjct: 1  MEGIMNKLRNLDAYPKINEDFYSRTLSGGVITLASSILMLLLFISEL 47