Jatropha Genome Database

JcCD0139939.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0139939.10 - phase: 0 /partial
         (56 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29613.m000358 omega-6 desaturase, endoplasmic reticulum                89   6e-19
28035.m000362 oleate 12-hydroxylase                                    86   4e-18
29681.m001360 Omega-3 fatty acid desaturase, endoplasmic reticul...    48   9e-07
28176.m000273 Omega-3 fatty acid desaturase, chloroplast precurs...    47   2e-06
29814.m000719 Omega-3 fatty acid desaturase, chloroplast precursor     46   3e-06

>29613.m000358 omega-6 desaturase, endoplasmic reticulum
          Length = 383

 Score = 88.6 bits (218), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 40/49 (81%), Positives = 43/49 (87%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQFDRTPFFKAMWREGKKSAF 49
           VAHHLFSTMPHYHAMEAT AIKPILGEYYQFD T F+KAMWRE K+  +
Sbjct: 316 VAHHLFSTMPHYHAMEATKAIKPILGEYYQFDGTSFYKAMWREAKECIY 364


>28035.m000362 oleate 12-hydroxylase
          Length = 387

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 36/50 (72%), Positives = 44/50 (88%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQFDRTPFFKAMWREGKKSAFT 50
           VAHHLF+T+PHYHAMEAT AIKPI+GEYY++D TPF+KA+WRE K+  F 
Sbjct: 320 VAHHLFATVPHYHAMEATKAIKPIMGEYYRYDGTPFYKALWREAKECLFV 369


>29681.m001360 Omega-3 fatty acid desaturase, endoplasmic reticulum,
           putative
          Length = 506

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 25/33 (75%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQFDR 33
           V HHLF  +PHYH +EAT A KP+LG+YY+  R
Sbjct: 357 VIHHLFPQIPHYHLVEATKAAKPVLGKYYREPR 389


>28176.m000273 Omega-3 fatty acid desaturase, chloroplast precursor,
           putative
          Length = 452

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQ 30
           V HHLF  +PHYH +EAT A KP+LG+YY+
Sbjct: 376 VIHHLFPQIPHYHLIEATEAAKPVLGKYYR 405


>29814.m000719 Omega-3 fatty acid desaturase, chloroplast precursor
          Length = 460

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/30 (60%), Positives = 24/30 (80%)

Query: 1   VAHHLFSTMPHYHAMEATNAIKPILGEYYQ 30
           V HHLF  +PHYH +EAT A KP++G+YY+
Sbjct: 381 VIHHLFPQIPHYHLVEATEAAKPVMGKYYR 410