Jatropha Genome Database

JcCD0139598.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0139598.10 + phase: 1 /partial
         (83 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004583 isopentenyl-diphosphate delta isomerase, putative       161   5e-41

>29929.m004583 isopentenyl-diphosphate delta isomerase, putative
          Length = 314

 Score =  161 bits (408), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 74/83 (89%), Positives = 80/83 (96%)

Query: 1   DYLLFIVRDVNVNPNPNEVADIKYVNRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 60
           DYLLF+VRDVNVNPNP+EVAD+KYVNRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK
Sbjct: 232 DYLLFMVRDVNVNPNPDEVADVKYVNRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFK 291

Query: 61  WWEHVEQGTLKDVVDMQTIHKLT 83
           WWEH E+GTLK+  DM+TIHKLT
Sbjct: 292 WWEHAEKGTLKEATDMKTIHKLT 314