Jatropha Genome Database

JcCD0138510.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0138510.10 + phase: 0 /pseudo/partial
         (72 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008934 mads box protein, putative                               73   3e-14
30147.m014133 mads box protein, putative                               59   5e-10
30138.m003939 mads box protein, putative                               58   1e-09
29596.m000699 mads box protein, putative                               55   6e-09
29838.m001690 mads box protein, putative                               54   2e-08
29804.m001536 mads box protein, putative                               53   3e-08
29907.m000663 mads box protein, putative                               52   5e-08
29648.m001978 mads box protein, putative                               50   2e-07
30221.m002218 mads box protein, putative                               49   4e-07
30170.m013776 mads box protein, putative                               49   7e-07
29908.m005982 mads box protein, putative                               48   9e-07

>30174.m008934 mads box protein, putative
          Length = 244

 Score = 72.8 bits (177), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/35 (97%), Positives = 35/35 (100%)

Query: 1  GLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 35
          GLLKKAYELSVLCDAEVALIIFSSRGKLYEFG+AG
Sbjct: 27 GLLKKAYELSVLCDAEVALIIFSSRGKLYEFGNAG 61


>30147.m014133 mads box protein, putative
          Length = 213

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/33 (81%), Positives = 30/33 (90%)

Query: 1  GLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 33
          GLLKKAYELSVLCDAEVA+IIFS +G+L EF S
Sbjct: 27 GLLKKAYELSVLCDAEVAVIIFSQKGRLSEFAS 59


>30138.m003939 mads box protein, putative
          Length = 244

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/33 (72%), Positives = 32/33 (96%)

Query: 1  GLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 33
          GLLKKA+E+SVLCDAEVALI+FS++GKL+E+ +
Sbjct: 27 GLLKKAHEISVLCDAEVALIVFSTKGKLFEYST 59


>29596.m000699 mads box protein, putative
          Length = 262

 Score = 55.5 bits (132), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/34 (70%), Positives = 30/34 (88%)

Query: 1  GLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 34
          GLLKKA EL++LCDAEV ++IFSS GKLY+F S+
Sbjct: 27 GLLKKAKELAILCDAEVGVVIFSSTGKLYDFSSS 60


>29838.m001690 mads box protein, putative
          Length = 61

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 30/34 (88%)

Query: 1  GLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 34
          GL KKAYELS LCDAE+AL++FS+ GKL+E+ S+
Sbjct: 27 GLFKKAYELSTLCDAEIALLVFSATGKLFEYASS 60


>29804.m001536 mads box protein, putative
          Length = 266

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/33 (72%), Positives = 28/33 (84%)

Query: 1  GLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 33
          GLLKKA ELS+LCDAEV +IIFSS  KLY++ S
Sbjct: 54 GLLKKARELSILCDAEVGVIIFSSTSKLYDYAS 86


>29907.m000663 mads box protein, putative
          Length = 205

 Score = 52.0 bits (123), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 28/35 (80%)

Query: 1  GLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAG 35
          GLLKKA ELSVLCDAE+ L IFS+ GKLY+  + G
Sbjct: 27 GLLKKAKELSVLCDAEIGLFIFSAHGKLYDLATKG 61


>29648.m001978 mads box protein, putative
          Length = 234

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/33 (63%), Positives = 30/33 (90%)

Query: 1  GLLKKAYELSVLCDAEVALIIFSSRGKLYEFGS 33
          G++KKA E++VLCDAEV+LIIF+S GK++E+ S
Sbjct: 27 GIIKKAKEITVLCDAEVSLIIFASSGKMHEYCS 59


>30221.m002218 mads box protein, putative
          Length = 233

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/31 (67%), Positives = 27/31 (87%)

Query: 1  GLLKKAYELSVLCDAEVALIIFSSRGKLYEF 31
          GLLKK +ELSVLCDA++ LIIFSS GK+ ++
Sbjct: 27 GLLKKTHELSVLCDAQIGLIIFSSTGKMCQY 57


>30170.m013776 mads box protein, putative
          Length = 230

 Score = 48.5 bits (114), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/31 (70%), Positives = 26/31 (83%)

Query: 1  GLLKKAYELSVLCDAEVALIIFSSRGKLYEF 31
          GL+KKAYELSVLCD +VALI+FS  G+L  F
Sbjct: 27 GLIKKAYELSVLCDVDVALIMFSPSGRLSLF 57


>29908.m005982 mads box protein, putative
          Length = 347

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/31 (64%), Positives = 26/31 (83%)

Query: 1  GLLKKAYELSVLCDAEVALIIFSSRGKLYEF 31
          GL+KKAYELS+LCD ++ALI+FS  G+L  F
Sbjct: 27 GLIKKAYELSILCDIDIALIMFSPSGRLSHF 57