Jatropha Genome Database

JcCD0135314.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0135314.10 - phase: 0 /pseudo/partial
         (73 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29684.m000326 conserved hypothetical protein                           63   2e-11

>29684.m000326 conserved hypothetical protein
          Length = 400

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/50 (64%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 13  ISFWVEANLYFQFVSFLCCFPFTQMAGQVKCHKYSRRRPSEGWNFTVEKM 62
           IS   +  LY +FV  +  F   +MAGQVKCHKYSRRR SEGWNFTVEKM
Sbjct: 306 ISMKEDEMLYQEFVQKMN-FNKMKMAGQVKCHKYSRRRSSEGWNFTVEKM 354