Jatropha Genome Database

JcCD0119024.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0119024.10 - phase: 0 /pseudo/partial
         (112 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002389 Stem-specific protein TSJT1, putative                   112   5e-26
28460.m000084 Stem-specific protein TSJT1, putative                    94   1e-20
29844.m003215 Stem-specific protein TSJT1, putative                    58   1e-09
29844.m003331 Stem-specific protein TSJT1, putative                    57   2e-09

>29851.m002389 Stem-specific protein TSJT1, putative
          Length = 255

 Score =  112 bits (279), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 68/95 (71%), Gaps = 4/95 (4%)

Query: 21  IGPYVTVGHTRPIKSSRIL---EGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           I  Y T+    P  + ++L   EGTF  + + T K    FAALGA EGV +YWGIA DGS
Sbjct: 110 IEAYKTLRDRGPYPAHQVLKELEGTFGFVVYDT-KSGHVFAALGANEGVGLYWGIAADGS 168

Query: 78  VVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
           VVISDNLE IKGSCAKSFAPFP GCMFHSEQGLMS
Sbjct: 169 VVISDNLEVIKGSCAKSFAPFPSGCMFHSEQGLMS 203


>28460.m000084 Stem-specific protein TSJT1, putative
          Length = 226

 Score = 94.0 bits (232), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 65/95 (68%), Gaps = 4/95 (4%)

Query: 21  IGPYVTVGHTRPIKSSRI---LEGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGS 77
           I  Y T+    P  + ++   LEG+F  + + + K  + F ALG++ GV++YWGIA DGS
Sbjct: 110 IEAYRTLRDRGPYPADQVVKDLEGSFAFIIYDS-KAGIVFVALGSDGGVQLYWGIAADGS 168

Query: 78  VVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
           VVISD+L+ IK  CAKSFAPFP G MFHSE GLMS
Sbjct: 169 VVISDDLQVIKAGCAKSFAPFPAGFMFHSEGGLMS 203


>29844.m003215 Stem-specific protein TSJT1, putative
          Length = 249

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 9/96 (9%)

Query: 18  LKHIGPYVTVGHTRPIKSSRILEGTFR-ILWFMTLKLDMSFAALGAEEGVEMYWGIAGDG 76
           L+  GPY      R I      +G F  +L+  T K   +F A  A+  V  +WG   + 
Sbjct: 112 LRDRGPYPADQVVRDI------QGKFAFVLYDSTSK--ATFIAADADGSVPFFWGADSER 163

Query: 77  SVVISDNLEGIKGSCAKSFAPFPKGCMFHSEQGLMS 112
            +V+SD+ + ++ +C KSFAPFPKGC F +  GL S
Sbjct: 164 HLVLSDDAQILQQACGKSFAPFPKGCFFTTSGGLRS 199


>29844.m003331 Stem-specific protein TSJT1, putative
          Length = 236

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 43/87 (49%), Gaps = 10/87 (11%)

Query: 23  PYVTVGHTRPIKSSRILEGTFRILWFMTLKLDMSFAALGAEEGVEMYWGIAGDGSVVISD 82
           P   VGH         L G+F  + F      + F A      V +YWGI  DG V  +D
Sbjct: 121 PNHVVGH---------LSGSFAFIVFDNSTSTL-FVASDQFGKVPLYWGITADGYVAFAD 170

Query: 83  NLEGIKGSCAKSFAPFPKGCMFHSEQG 109
           N+E +KG+C KS A FP+GC + +  G
Sbjct: 171 NIELLKGACGKSLASFPQGCFYSTAVG 197