Jatropha Genome Database

JcCD0108263.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0108263.10 - phase: 2 /pseudo/partial
         (108 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29506.m000169 dynamin, putative                                       122   5e-29
29848.m004504 dynamin, putative                                        65   8e-12

>29506.m000169 dynamin, putative
          Length = 837

 Score =  122 bits (305), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 58/73 (79%), Positives = 66/73 (90%)

Query: 3   ILLQMDYINTSHPNFIGGSKAVEIALQQVKSSRAVPLSLRQKDGAEPDKAPASERTLKSR 62
           I ++MDYINTSHPNFIGGSKAVE ALQQ+KS+RAV L +RQKDG E DKAPASER++KSR
Sbjct: 504 IEMEMDYINTSHPNFIGGSKAVETALQQIKSARAVSLPMRQKDGIELDKAPASERSVKSR 563

Query: 63  AILARQVNGVVAD 75
           AILARQVNGV+ D
Sbjct: 564 AILARQVNGVMTD 576


>29848.m004504 dynamin, putative
          Length = 797

 Score = 64.7 bits (156), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 10/71 (14%)

Query: 3   ILLQMDYINTSHPNFIGGSKAVEIALQQVKSSRAVPLSLRQKDGAEPDKAPASERTLKSR 62
           I ++MDYIN+SHPNFIGG++AVE+A+QQVK       S++   G E    P  E+   SR
Sbjct: 500 IEMEMDYINSSHPNFIGGNRAVELAMQQVK-------SIQDNIGVEKLSTP--EKGKGSR 550

Query: 63  AILARQV-NGV 72
           A+LAR V NGV
Sbjct: 551 AVLARSVANGV 561