Jatropha Genome Database

JcCD0101804.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0101804.10 + phase: 0 /pseudo
         (121 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29751.m001805 proliferating cell nuclear antigen, putative            205   3e-54

>29751.m001805 proliferating cell nuclear antigen, putative
          Length = 266

 Score =  205 bits (522), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 95/107 (88%), Positives = 106/107 (99%)

Query: 1   MLELRLVQGSLLKKVLDAIKELVKDANFDCSTTGFSLQAMDSSHVALVSLLLRAEGFEHY 60
           MLELRLVQGSLLKKVLD+IK+LV DANFDCS+TGFSLQAMDSSHVALV+LLLR+EGFEHY
Sbjct: 1   MLELRLVQGSLLKKVLDSIKDLVNDANFDCSSTGFSLQAMDSSHVALVALLLRSEGFEHY 60

Query: 61  RCDRNLSMGMNLDNMAKMLKCSGNDDIITIKADDGSDSVTFMFESPS 107
           RCDRN+SMGMNL+NM+KML+CSGNDDIITIKADDGSD+VTFMFESP+
Sbjct: 61  RCDRNISMGMNLNNMSKMLRCSGNDDIITIKADDGSDTVTFMFESPT 107