Jatropha Genome Database

JcCD0099951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0099951.10 - phase: 0 /partial/short
         (49 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29815.m000491 ubiquitin-protein ligase, putative                       87   2e-18
29889.m003352 ubiquitin-protein ligase, putative                       50   2e-07

>29815.m000491 ubiquitin-protein ligase, putative
          Length = 1148

 Score = 86.7 bits (213), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/40 (95%), Positives = 40/40 (100%)

Query: 10  SFVSECGIPEAGLDYGGLSKEFLTDISKAAFSPEYGLFSQ 49
           SFVSECG+PEAGLDYGGLSKEFLTDISKA+FSPEYGLFSQ
Sbjct: 831 SFVSECGVPEAGLDYGGLSKEFLTDISKASFSPEYGLFSQ 870


>29889.m003352 ubiquitin-protein ligase, putative
          Length = 1067

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 32/40 (80%)

Query: 10  SFVSECGIPEAGLDYGGLSKEFLTDISKAAFSPEYGLFSQ 49
           +FV+E G+ EAG+D GG+ K+F+ +I++AAF  +YGLF +
Sbjct: 704 TFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKE 743