Jatropha Genome Database

JcCD0081914.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0081914.10 + phase: 0 /partial
         (69 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008623 Zeta-carotene desaturase, chloroplast precursor, p...    71   8e-14

>30128.m008623 Zeta-carotene desaturase, chloroplast precursor,
           putative
          Length = 964

 Score = 71.2 bits (173), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/35 (85%), Positives = 33/35 (94%)

Query: 28  KVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFLA 62
           +VDIYESR+FIGGKVGSFVD+RGNHIEMGLHVF  
Sbjct: 104 EVDIYESRTFIGGKVGSFVDRRGNHIEMGLHVFFG 138