Jatropha Genome Database

JcCD0077184.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0077184.10 + phase: 0 /partial
         (130 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004547 ornithine decarboxylase, putative                       193   2e-50
30170.m014298 ornithine decarboxylase, putative                       165   4e-42
30170.m014299 ornithine decarboxylase, putative                       147   1e-36
30170.m014295 ornithine decarboxylase, putative                        69   6e-13

>29929.m004547 ornithine decarboxylase, putative
          Length = 203

 Score =  193 bits (490), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 89/113 (78%), Positives = 103/113 (91%)

Query: 1   SDKQEEAEPFYLIDLGVVIRLMDKWNQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCA 60
           S+ QEEAEPFY++D+GVVI L++KW+  LP+VKPFYAVK N E ALL+ LATLGANFDCA
Sbjct: 47  SENQEEAEPFYILDIGVVISLVEKWSHHLPHVKPFYAVKRNNESALLIVLATLGANFDCA 106

Query: 61  SQAEIETILGLGVNPDRIVYANPCKSVSHIKYAARVGVNLTTFDSKQEVDKIK 113
           SQAEIE ILGLG++PDRI+YANPCKSVSHIKYAARVGV LTTFDSK+EVDKI+
Sbjct: 107 SQAEIEAILGLGISPDRILYANPCKSVSHIKYAARVGVYLTTFDSKEEVDKIR 159


>30170.m014298 ornithine decarboxylase, putative
          Length = 416

 Score =  165 bits (418), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 92/112 (82%)

Query: 2   DKQEEAEPFYLIDLGVVIRLMDKWNQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCAS 61
           + Q   EPFY+++LG V  LMD W++ LP ++PFYAVKCN+EP+LL +LA LG NFDCAS
Sbjct: 41  NTQVTKEPFYVLNLGAVAELMDTWSRQLPMIQPFYAVKCNSEPSLLGALAALGCNFDCAS 100

Query: 62  QAEIETILGLGVNPDRIVYANPCKSVSHIKYAARVGVNLTTFDSKQEVDKIK 113
           + EI+TIL LGV+PDRIVYANPCK+ SH+KYAA VGVNLTTFDS  E+DKI 
Sbjct: 101 KVEIQTILSLGVSPDRIVYANPCKAESHLKYAASVGVNLTTFDSVYELDKIS 152


>30170.m014299 ornithine decarboxylase, putative
          Length = 416

 Score =  147 bits (371), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 69/112 (61%), Positives = 87/112 (77%)

Query: 2   DKQEEAEPFYLIDLGVVIRLMDKWNQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCAS 61
           + Q   E FY++DLG V  LM KW++ LP ++P+YAVKCN+E +L+ +LA LG NFDCAS
Sbjct: 42  NTQVNRESFYVLDLGAVAGLMHKWSRELPMIQPYYAVKCNSEISLIGALAALGCNFDCAS 101

Query: 62  QAEIETILGLGVNPDRIVYANPCKSVSHIKYAARVGVNLTTFDSKQEVDKIK 113
           +AEI++IL LGV+PDRI+YANP K  SHI YAA V VNLTTFDSK E+ KI 
Sbjct: 102 KAEIQSILSLGVSPDRIIYANPSKPESHIIYAANVDVNLTTFDSKHELHKIS 153


>30170.m014295 ornithine decarboxylase, putative
          Length = 78

 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query: 22 MDKWNQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCASQAEIE 66
          MDKW ++LP V+P YAVKCN EP  + +LATLG+NFDCAS+A+++
Sbjct: 1  MDKWTRTLPMVRPLYAVKCNPEPTPVGTLATLGSNFDCASRADLK 45