Jatropha Genome Database

JcCD0070253.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0070253.10 - phase: 1 /pseudo/partial
         (190 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28565.m000327 Programmed cell death 6-interacting protein, putative   215   9e-57

>28565.m000327 Programmed cell death 6-interacting protein, putative
          Length = 683

 Score =  215 bits (548), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 106/125 (84%), Positives = 111/125 (88%)

Query: 66  KENDRVYLMRVXXXXXXXXXXAFSMVKPMAMNEVLDASKEKMFASLVPDSSAKALSRYTE 125
           KENDRVYLMR+          AFSMVKPM+MNEVLDASKEKMFA+LVPDSSAKALSRYTE
Sbjct: 136 KENDRVYLMRIPSPTSLPPLPAFSMVKPMSMNEVLDASKEKMFATLVPDSSAKALSRYTE 195

Query: 126 MVDEVIRTQAEKLQQASELTRVRLKEMDLPESILALEGNFTLPADLKEDVEAVQISGGPA 185
           MVDE+IR QAEKLQQ SELTRVRLKEMDLP+SILALEGNFTLP DLKEDVEAVQISGGPA
Sbjct: 196 MVDEIIRVQAEKLQQGSELTRVRLKEMDLPDSILALEGNFTLPTDLKEDVEAVQISGGPA 255

Query: 186 GLEAE 190
           GLE E
Sbjct: 256 GLEVE 260