Jatropha Genome Database
- JcCD0068965.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCD0068965.10 - phase: 1 /partial
(124 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30078.m002329 Auxin response factor, putative 223 2e-59
27494.m000045 Auxin response factor, putative 150 1e-37
27538.m000327 Auxin response factor, putative 134 1e-32
29609.m000587 Auxin response factor, putative 49 8e-07
30068.m002516 hypothetical protein 48 8e-07
30076.m004546 Auxin-responsive protein IAA20, putative 47 2e-06
30170.m014161 Auxin response factor, putative 47 2e-06
29742.m001397 Auxin response factor, putative 47 2e-06
>30078.m002329 Auxin response factor, putative
Length = 702
Score = 223 bits (567), Expect = 2e-59, Method: Composition-based stats.
Identities = 108/122 (88%), Positives = 110/122 (90%)
Query: 3 NFSDGSGSAFHQQGLLERSSCEGFQWYKDNRQENEMSLETGICKVFMESEDVGRTLDLSL 62
NFSDGSGSA HQQGL E SS EGFQW K NRQE E SLETG CKVFMESEDVGRTLDLSL
Sbjct: 577 NFSDGSGSALHQQGLPEHSSYEGFQWCKGNRQETEPSLETGHCKVFMESEDVGRTLDLSL 636
Query: 63 LRSYEELYRKLADMFGIENSETLNNVLYRDITGSVKHIGDEPFSDFMKTARRLTILMDSS 122
L SY+ELYRKLADMFGIENSETLNNVLYRDI G VKHIGDEPFSDFMKTARRLTI+MDSS
Sbjct: 637 LGSYDELYRKLADMFGIENSETLNNVLYRDIAGIVKHIGDEPFSDFMKTARRLTIIMDSS 696
Query: 123 SD 124
SD
Sbjct: 697 SD 698
>27494.m000045 Auxin response factor, putative
Length = 590
Score = 150 bits (379), Expect = 1e-37, Method: Composition-based stats.
Identities = 78/121 (64%), Positives = 93/121 (76%), Gaps = 1/121 (0%)
Query: 4 FSDGSGSAFHQQGLLERSSCEGFQWYKDNRQENEMSLETGICKVFMESEDVGRTLDLSLL 63
GS SA HQ LE SS EG YK++ + ++ LETG CKVFMESEDVGRTLDLS+L
Sbjct: 467 LQSGSVSASHQTTTLENSSDEGSPSYKEH-WKTDLGLETGHCKVFMESEDVGRTLDLSVL 525
Query: 64 RSYEELYRKLADMFGIENSETLNNVLYRDITGSVKHIGDEPFSDFMKTARRLTILMDSSS 123
SYEELY KLA+MF IENS+ L++VLYRD G++K GDEPFS+F+KTARRLTIL DS S
Sbjct: 526 GSYEELYGKLANMFEIENSDMLSSVLYRDAAGAIKRTGDEPFSEFLKTARRLTILTDSGS 585
Query: 124 D 124
+
Sbjct: 586 E 586
>27538.m000327 Auxin response factor, putative
Length = 709
Score = 134 bits (336), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 83/115 (72%), Gaps = 2/115 (1%)
Query: 9 GSAFHQQGLLERSSCEGFQWYKDNRQENEMSLETGICKVFMESEDVGRTLDLSLLRSYEE 68
GS +Q E+S+ G W + E L+ G CKVF+ESEDVGRTLDLS+L SYEE
Sbjct: 565 GSTPEKQTSPEKSASTGLSW--QSLHTTETGLDAGHCKVFLESEDVGRTLDLSVLGSYEE 622
Query: 69 LYRKLADMFGIENSETLNNVLYRDITGSVKHIGDEPFSDFMKTARRLTILMDSSS 123
LY +LA+MFGIE SE L++VLYRD G+++ GDEPFS F KTA+RLTILM+ +S
Sbjct: 623 LYSRLANMFGIERSEMLHHVLYRDAAGAIRQTGDEPFSVFAKTAKRLTILMNPAS 677
>29609.m000587 Auxin response factor, putative
Length = 671
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 22 SCEGFQWYKDNRQENEMSLETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIEN 81
SCE + + QE + KV M+ VGR +DL+ YE+L RKL +MF IE
Sbjct: 525 SCEPEKSCLRSPQELQSRQIRSCTKVHMQGIAVGRAVDLTRFECYEDLLRKLEEMFDIEG 584
Query: 82 S----ETLNNVLYRDITGSVKHIGDEPFSDFMKTARRLTI 117
V+Y D + +GD+P+ +F R++ I
Sbjct: 585 ELSGFSKKWQVVYTDDEDDMMMVGDDPWHEFCSMVRKIFI 624
>30068.m002516 hypothetical protein
Length = 694
Score = 48.1 bits (113), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 46 KVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIENSETLNN---VLYRDITGSVKHIGD 102
KV M+ VGR +DL++++ Y +L +L +MF I+ + ++Y D G + +GD
Sbjct: 586 KVQMQGVAVGRAIDLTMIKGYNQLLDELEEMFDIKGQLHPRDKWEIVYTDDEGDMMLVGD 645
Query: 103 EPFSDFMKTARRLTI 117
+P+ +F RR+ I
Sbjct: 646 DPWPEFCNMVRRIFI 660
>30076.m004546 Auxin-responsive protein IAA20, putative
Length = 175
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 9/93 (9%)
Query: 34 QENEMSLETGICKVFMESEDVGRTLDLSLLRSYEELYRKLADMFG---------IENSET 84
+ENE + T KV+ME +GR LDL Y +L L MF EN E
Sbjct: 78 EENECNSATFYVKVYMEGIPIGRKLDLLAHDGYHDLIATLDHMFSTNILWAEMDCENFEQ 137
Query: 85 LNNVLYRDITGSVKHIGDEPFSDFMKTARRLTI 117
+ + Y D G +GD P+ F+ + +RL I
Sbjct: 138 CHVLTYEDKEGDWLIVGDVPWEMFLSSVKRLKI 170
>30170.m014161 Auxin response factor, putative
Length = 950
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Query: 54 VGRTLDLSLLRSYEELYRKLADMFGIENSETLNN-------VLYRDITGSVKHIGDEPFS 106
VGR++D+S ++YEEL + MFG+E LNN ++Y D V IGD+P+
Sbjct: 847 VGRSIDVSGFKNYEELCSAIECMFGLEG--LLNNPRESGWKLVYVDYENDVLLIGDDPWE 904
Query: 107 DFMKTARRLTILMDS 121
+F+ R + IL S
Sbjct: 905 EFVGCVRCIRILSPS 919
>29742.m001397 Auxin response factor, putative
Length = 667
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 46 KVFMESEDVGRTLDLSLLRSYEELYRKLADMFGIENSETLNN---VLYRDITGSVKHIGD 102
KV M+ VGR +DL+ L+ Y +L ++L ++F I+ + V++ D G + +GD
Sbjct: 556 KVQMQGVAVGRAVDLTALKGYGDLIKELEELFEIKGELSTREKWAVVFTDDEGDMMLVGD 615
Query: 103 EPFSDFMKTARRLTI 117
+P+ +F K R++ I
Sbjct: 616 DPWREFCKMVRKILI 630