Jatropha Genome Database

JcCD0062953.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0062953.10 - phase: 2 /pseudo/partial
         (76 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29596.m000719 GATA transcription factor, putative                      47   1e-06

>29596.m000719 GATA transcription factor, putative
          Length = 327

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/22 (86%), Positives = 22/22 (100%)

Query: 31  ETPVDIKPSIMEGEYSGNQDEH 52
           ETP+D+KPSIMEGE+SGNQDEH
Sbjct: 258 ETPIDVKPSIMEGEFSGNQDEH 279