Jatropha Genome Database

JcCD0062698.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0062698.10 + phase: 0 /partial
         (144 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

44978.m000014 conserved hypothetical protein                          209   4e-55
30170.m013673 conserved hypothetical protein                          170   2e-43

>44978.m000014 conserved hypothetical protein
          Length = 352

 Score =  209 bits (532), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/144 (71%), Positives = 116/144 (80%)

Query: 1   MFLDQEKVGERLHDSPSLSMLSSNIDMKSKENTFFISKGCSQIEFGLVXXXXXXXXXXXX 60
           +FL++EKVGERL DSP LSML+S +D+KSKE+ F +SK  SQIEFGLV            
Sbjct: 77  IFLNKEKVGERLQDSPGLSMLTSQVDLKSKESPFLVSKESSQIEFGLVNSDSLLNPSQNS 136

Query: 61  XXXXXCRNFGSSQDLTDQETVSQHSVRQFIDDWPKSQSDKSSVSWPQLDVQSDRTQLSIS 120
                CRNFGSSQDLTDQ+TVSQHSVRQF+DDWPKSQSD+S+VSWPQLDVQSDRTQLSIS
Sbjct: 137 SPLISCRNFGSSQDLTDQDTVSQHSVRQFMDDWPKSQSDRSAVSWPQLDVQSDRTQLSIS 196

Query: 121 IPTIAHTDYMSSTSSPNNERVTLS 144
           IP   H DYMSSTSSPNNE+VTLS
Sbjct: 197 IPIGHHADYMSSTSSPNNEKVTLS 220


>30170.m013673 conserved hypothetical protein
          Length = 617

 Score =  170 bits (430), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/148 (63%), Positives = 106/148 (71%), Gaps = 5/148 (3%)

Query: 1   MFLDQEKVGERLHDSPSLSMLSSNIDMKSKENTFFISKG----CSQIEFGLVXXXXXXXX 56
           M L++E +GERL DSPSLSM SS I +KSKEN FFISK      SQIEFG V        
Sbjct: 338 MILNKENLGERLQDSPSLSMQSSKIYLKSKENPFFISKHPYQESSQIEFGHVNFDSLLNP 397

Query: 57  XXXXXXXXXCRNFGSSQDLTDQETVSQHSVRQFIDDWPKSQSDKSSVSWPQLDVQSDRTQ 116
                    CRNF SSQD++ QET+SQHS RQF+DDWPKSQSD+SSVSWPQLDVQSDRTQ
Sbjct: 398 SQNSSSLISCRNFASSQDMSGQETISQHSFRQFMDDWPKSQSDQSSVSWPQLDVQSDRTQ 457

Query: 117 LSISIPTIAHTDYMSSTSSPNNERVTLS 144
           LSISIP    TD+ SSTSSP+NE   +S
Sbjct: 458 LSISIPNDP-TDFKSSTSSPSNEIFAVS 484