Jatropha Genome Database

JcCD0062083.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0062083.10 + phase: 0 
         (73 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008987 conserved hypothetical protein                           96   3e-21

>30174.m008987 conserved hypothetical protein
          Length = 88

 Score = 95.9 bits (237), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 43/50 (86%), Positives = 45/50 (90%)

Query: 10 GDFRGKVWSMSGGPYCRPKHWRRNTAIAMASVFLICIPIAMKSAELEVFP 59
          GDFR KVWSM GGPYCRPKHWRRNTAIAMA +FL+CIPIAMKSAELE  P
Sbjct: 14 GDFRAKVWSMPGGPYCRPKHWRRNTAIAMAGLFLVCIPIAMKSAELEQRP 63