Jatropha Genome Database

JcCD0056747.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0056747.10 + phase: 0 /pseudo/partial
         (77 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28637.m000206 Diaminopimelate epimerase, putative                      68   8e-13

>28637.m000206 Diaminopimelate epimerase, putative
          Length = 369

 Score = 68.2 bits (165), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/80 (47%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 1   FVQVYSHSHLKMCVWERGGVQPXPVER---AXXXXXXXXXXXXXXXXXXXXXXXXEIEWR 57
           FVQV+SHSHLKM VWERG            A                        EIEW+
Sbjct: 288 FVQVHSHSHLKMRVWERGAGATLACGTGACATVVAAVLEGRAGRNCTVDLPGGPLEIEWK 347

Query: 58  EENNHVYMTGPAEVVFYGSV 77
           EE+NHVYMTGPAE VFYG+V
Sbjct: 348 EEDNHVYMTGPAEAVFYGAV 367