Jatropha Genome Database

JcCD0055831.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0055831.10 + phase: 0 /partial
         (87 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30005.m001300 chlorophyll A/B binding protein, putative               169   2e-43
29693.m002051 chlorophyll A/B binding protein, putative               167   1e-42
30076.m004578 chlorophyll A/B binding protein, putative               117   1e-27
29597.m000282 chlorophyll A/B binding protein, putative                91   9e-20
30027.m000815 chlorophyll A/B binding protein, putative                83   2e-17
30170.m013809 chlorophyll A/B binding protein, putative                57   3e-09
29827.m002667 chlorophyll A/B binding protein, putative                45   8e-06

>30005.m001300 chlorophyll A/B binding protein, putative
          Length = 265

 Score =  169 bits (428), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/87 (95%), Positives = 85/87 (97%)

Query: 1  MATSTMALSSPSLAGKAVKLGPSAPELMGNGRVTMRKTASKNVSSGSPWYGPDRVKYLGP 60
          MATSTMALSSPS AGKAVKL PSAPELMGNGRV+MRKTA+KNVSSGSPWYGPDRVKYLGP
Sbjct: 1  MATSTMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKNVSSGSPWYGPDRVKYLGP 60

Query: 61 FSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          FSGEPPSYLTGEFPGDYGWDTAGLSAD
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSAD 87


>29693.m002051 chlorophyll A/B binding protein, putative
          Length = 265

 Score =  167 bits (422), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/87 (94%), Positives = 85/87 (97%)

Query: 1  MATSTMALSSPSLAGKAVKLGPSAPELMGNGRVTMRKTASKNVSSGSPWYGPDRVKYLGP 60
          MATSTMALSSPS AGKAVKL PSAPELMGNGRV+MRKTA+K+VSSGSPWYGPDRVKYLGP
Sbjct: 1  MATSTMALSSPSFAGKAVKLSPSAPELMGNGRVSMRKTAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61 FSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          FSGEPPSYLTGEFPGDYGWDTAGLSAD
Sbjct: 61 FSGEPPSYLTGEFPGDYGWDTAGLSAD 87


>30076.m004578 chlorophyll A/B binding protein, putative
          Length = 267

 Score =  117 bits (292), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 68/89 (76%), Gaps = 6/89 (6%)

Query: 4  STMALSSPSLAGKAVKLGPS----APELMGNGRVTMRKTASK-NVSSGSPWYGPDRVKYL 58
          +TM LSS +  GKAV L       A     NGRVTMRKTA K   SSGSPWYGPDRVKYL
Sbjct: 2  ATMTLSS-TFTGKAVPLSAQTELPATVRSSNGRVTMRKTAGKPAASSGSPWYGPDRVKYL 60

Query: 59 GPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          GPFSGEPPSYLTGEFPGDYGWDTAGLSAD
Sbjct: 61 GPFSGEPPSYLTGEFPGDYGWDTAGLSAD 89


>29597.m000282 chlorophyll A/B binding protein, putative
          Length = 265

 Score = 91.3 bits (225), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/92 (57%), Positives = 62/92 (67%), Gaps = 10/92 (10%)

Query: 1  MATSTMALSSPSLAGKAVKLGPSAPEL-----MGNGRVTMRKTASKNVSSGSPWYGPDRV 55
          MATS  A+   + AG+   L PS   +     +G GR+TMR+T     +  S WYGPDR 
Sbjct: 1  MATS--AIQQSAFAGQTA-LKPSNELVRKVGSVGGGRITMRRTVKS--APQSIWYGPDRP 55

Query: 56 KYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          KYLGPFS + PSYLTGEFPGDYGWDTAGLSAD
Sbjct: 56 KYLGPFSEQTPSYLTGEFPGDYGWDTAGLSAD 87


>30027.m000815 chlorophyll A/B binding protein, putative
          Length = 268

 Score = 83.2 bits (204), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 42/60 (70%), Gaps = 9/60 (15%)

Query: 28 MGNGRVTMRKTASKNVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
          MGNG+  M             WYGPDRVKYLGPFS + PSYL GEFPGDYGWDTAGLSAD
Sbjct: 38 MGNGKYIM---------GNELWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSAD 88


>30170.m013809 chlorophyll A/B binding protein, putative
          Length = 329

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 31/41 (75%)

Query: 47  SPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSAD 87
           S WYG +R ++LGP   + P+YLTGE PGDYG+D AGLS D
Sbjct: 105 SLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDVAGLSKD 145


>29827.m002667 chlorophyll A/B binding protein, putative
          Length = 292

 Score = 45.1 bits (105), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 26/40 (65%), Gaps = 3/40 (7%)

Query: 49  WYGPDRVKYL--GPFS-GEPPSYLTGEFPGDYGWDTAGLS 85
           WYGPDR  +L  G     E P YLTGE PGDYG+D  GLS
Sbjct: 74  WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLS 113