Jatropha Genome Database

JcCD0054966.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0054966.10 - phase: 0 
         (96 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003359 conserved hypothetical protein                          132   3e-32
30146.m003441 hypothetical protein                                     94   2e-20

>29794.m003359 conserved hypothetical protein
          Length = 720

 Score =  132 bits (333), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/73 (87%), Positives = 68/73 (93%), Gaps = 1/73 (1%)

Query: 1  MKRGKDDEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRF-NHAVLPLNPS 59
          MKRGKDDEK+MGPMFPRLHVNDT+KGGPRAPPRNKMALYEQLSIPSQRF NH  L  NPS
Sbjct: 5  MKRGKDDEKMMGPMFPRLHVNDTDKGGPRAPPRNKMALYEQLSIPSQRFNNHGALLHNPS 64

Query: 60 KASNLIPAASSSQ 72
          KA+NL+PAASSSQ
Sbjct: 65 KATNLVPAASSSQ 77


>30146.m003441 hypothetical protein
          Length = 783

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 3/79 (3%)

Query: 1  MKRGKDDEKIMGPMFPRLHVNDTEKGGPRAPPRNKMALYEQLSIPSQRFNH---AVLPLN 57
          M+  KD++K++ PMFPRLHVNDTEKGGPRAPPRNKMALYEQL IPS++ +    ++LPL 
Sbjct: 2  MRGTKDEDKMISPMFPRLHVNDTEKGGPRAPPRNKMALYEQLGIPSRKVSSGSASMLPLP 61

Query: 58 PSKASNLIPAASSSQVAVE 76
          P+  S  +P    S V  +
Sbjct: 62 PNNGSTFVPKMLPSHVTSD 80