Jatropha Genome Database

JcCD0054045.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0054045.10 + phase: 1 /TE/partial
         (214 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29596.m000691 hypothetical protein                                     49   2e-06

>29596.m000691 hypothetical protein
          Length = 415

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 1/67 (1%)

Query: 4   DGSLSYRGGDAHAIDIDDQMKFNDFKTEVAEMFNCSINNMSLKYFLPG-NRKTLITISND 62
           D  L+Y GGD   + ++  +KF+ F ++ A + N   +++  KY LPG +   LI+++ND
Sbjct: 61  DNQLAYIGGDTKILAVERNIKFSLFISKFASLCNTDHHHICFKYQLPGEDLDALISVTND 120

Query: 63  KDLKRML 69
           +DL+ M+
Sbjct: 121 EDLEHMM 127