Jatropha Genome Database

JcCD0053272.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0053272.10 + phase: 0 /pseudo/partial
         (177 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30072.m000942 replication factor C / DNA polymerase III gamma-ta...   211   1e-55
29634.m002116 replication factor C / DNA polymerase III gamma-ta...   105   8e-24
28098.m000127 Replication factor C subunit, putative                   89   9e-19

>30072.m000942 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 342

 Score =  211 bits (538), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/128 (78%), Positives = 105/128 (82%)

Query: 18  QIVKVLELIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFETCRVQQYPFTSNQAIPPMD 77
           QIVKVLE IGKKEGLQLP GFAAR+AEKSNRSLRRA+LSFETCRVQQYPFTSNQ IPPMD
Sbjct: 194 QIVKVLEFIGKKEGLQLPHGFAARVAEKSNRSLRRAVLSFETCRVQQYPFTSNQPIPPMD 253

Query: 78  WEEYVSEIATDIMREQSPKKLFQVRGKLYELLINCIPPEIIXXXXXXXXXXXXXXXXXXX 137
           WEEYVSEIA+DIMREQSPKKLFQVRGKLYELLINCIPP+II                   
Sbjct: 254 WEEYVSEIASDIMREQSPKKLFQVRGKLYELLINCIPPDIILKRLVNELLKKLDEELKHE 313

Query: 138 XSHWAAYY 145
            SHWAAYY
Sbjct: 314 VSHWAAYY 321


>29634.m002116 replication factor C / DNA polymerase III gamma-tau
           subunit, putative
          Length = 779

 Score =  105 bits (263), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 58/157 (36%), Positives = 85/157 (54%), Gaps = 7/157 (4%)

Query: 18  QIVKVLELIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFETCRVQQYPFTSNQAIPPMD 77
           +I++VL  I +KE  +LP  FAARIA KS + LR+AI++ E C+   YPF  +Q IP   
Sbjct: 615 EIMEVLIQIARKEEFELPMNFAARIAAKSKQHLRKAIMTLEACKEHNYPFADDQPIPS-S 673

Query: 78  WEEYVSEIATDIMREQSPKKLFQVRGKLYELLINCIPPEIIXXXXXXXXXXXXXXXXXXX 137
           WEE + E+A +I+ + SPK+LF VRGK  +LL++ + P++I                   
Sbjct: 674 WEEVLIELAAEILSDPSPKRLFMVRGKFQKLLLDFVHPKLILLKLVEQFLKGVDASSKRE 733

Query: 138 XSHWAAYYVSSCNFLMCICQNSHSILALVNLVRRFAS 174
             +W AYY         I   S ++L L   V +F S
Sbjct: 734 LYYWHAYYEKR------IPTGSSALLKLEEFVAKFMS 764


>28098.m000127 Replication factor C subunit, putative
          Length = 661

 Score = 89.4 bits (220), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 46/101 (45%), Positives = 70/101 (69%), Gaps = 1/101 (0%)

Query: 18  QIVKVLELIGKKEGLQLPPGFAARIAEKSNRSLRRAILSFETCRVQQYPFTSNQAIPPMD 77
           +IVKVL+ I K+EG++LP  FA RIA +S  +LR+AI S E    + YPF  +Q I    
Sbjct: 487 EIVKVLKFIAKQEGIELPFQFAERIALESKNNLRQAIRSLEASWRRSYPFAEDQEI-LTG 545

Query: 78  WEEYVSEIATDIMREQSPKKLFQVRGKLYELLINCIPPEII 118
           WE+ ++ IA ++++EQSPK+L+ +RGKL +L+ + + PE I
Sbjct: 546 WEDDIANIAKNMIQEQSPKQLYIIRGKLQKLIEHDVSPEFI 586