Jatropha Genome Database

JcCD0051435.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0051435.10 - phase: 2 /pseudo/partial
         (218 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007228 conserved hypothetical protein                          290   3e-79

>30131.m007228 conserved hypothetical protein
          Length = 1492

 Score =  290 bits (743), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 151/205 (73%), Positives = 155/205 (75%), Gaps = 43/205 (20%)

Query: 14  PGLKEFDFLI*SSLVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALP 73
           P  +  DFLI   +VSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALP
Sbjct: 445 PWSERVDFLI-EVMVSFFEKQQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALP 503

Query: 74  KLNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYINNEGETAFRGWSRMAVP 133
           KLNLQFLTLHDYLLRNFNLFRLES YEIREDIQEAVPHLLAY+NNEGETA          
Sbjct: 504 KLNLQFLTLHDYLLRNFNLFRLESMYEIREDIQEAVPHLLAYVNNEGETA---------- 553

Query: 134 IKEFKIAEVKQPNIGEVKPSSVTAEVTFSISSYKSQIRSEWNALKEHDVLFLLSIRPSFE 193
                                           YK+QIRSEWNALKEHDVLFLLSIRPSFE
Sbjct: 554 --------------------------------YKAQIRSEWNALKEHDVLFLLSIRPSFE 581

Query: 194 PLSAEEAGKATVPQRLGLQYVRGCE 218
           PLSAEEAGKATVPQRLGLQYVRGCE
Sbjct: 582 PLSAEEAGKATVPQRLGLQYVRGCE 606