Jatropha Genome Database

JcCD0051196.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCD0051196.10 - phase: 0 /pseudo/partial
         (309 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30040.m000267 conserved hypothetical protein                          154   5e-38
30131.m006948 conserved hypothetical protein                           89   2e-18

>30040.m000267 conserved hypothetical protein
          Length = 1020

 Score =  154 bits (389), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/77 (94%), Positives = 74/77 (96%)

Query: 1   QSTNLLDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSX 60
           QSTNL+DNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACS 
Sbjct: 484 QSTNLMDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATNLTSLLTNERFHRCMLACSA 543

Query: 61  ELVLAXHKTXTMLFPAV 77
           ELVLA HKT TMLFPAV
Sbjct: 544 ELVLATHKTVTMLFPAV 560



 Score =  140 bits (352), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/88 (79%), Positives = 75/88 (85%), Gaps = 8/88 (9%)

Query: 183 VSRMEISGLQ-------KRSCPDYRSVLVERNSFTSPVKDRLLAFSNLKSKLPPP-LQSA 234
           VS+ EIS  Q       KR C DYRSVLVERNSFTSPVKDRLLAF+NLKSKLPPP LQSA
Sbjct: 660 VSKHEISPGQNGDIRSPKRPCTDYRSVLVERNSFTSPVKDRLLAFTNLKSKLPPPPLQSA 719

Query: 235 FASPTRPNPGGGGETCAETGINVFFTKV 262
           FASPTRPNPGGGGETCAETGIN+FF+K+
Sbjct: 720 FASPTRPNPGGGGETCAETGINIFFSKI 747


>30131.m006948 conserved hypothetical protein
          Length = 612

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 42/78 (53%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 1   QSTNLLDNIWAEQRRLEALKLYYRVLEAMCTAEAQILHATN-LTSLLTNERFHRCMLACS 59
           Q  NL++++W+EQRR EALKLYYRVLE++C +EA   + ++ L+ LL+NERFHRC+LACS
Sbjct: 119 QDVNLMESMWSEQRRSEALKLYYRVLESVCQSEAGKSNTSDHLSGLLSNERFHRCLLACS 178

Query: 60  XELVLAXHKTXTMLFPAV 77
            ELV A      ML   +
Sbjct: 179 AELVSAAQTGTGMLLSVI 196