Jatropha Genome Database

JcCB1007071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB1007071.10 + phase: 0 /partial/short
         (33 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27613.m000621 Calcium-binding protein, putative                        62   8e-11
29964.m000157 Calcium-binding protein, putative                        55   9e-09
29608.m000205 Calcium-binding protein, putative                        48   1e-06

>27613.m000621 Calcium-binding protein, putative
          Length = 341

 Score = 61.6 bits (148), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 32/36 (88%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           ELLTRHKSTVAGFLSKNYDW   DFNS+LLES +YI
Sbjct: 192 ELLTRHKSTVAGFLSKNYDWFFQDFNSQLLESDNYI 227


>29964.m000157 Calcium-binding protein, putative
          Length = 445

 Score = 54.7 bits (130), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 31/36 (86%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           ELLTRHKSTVA FLSKNY+W   ++NSKLLES +YI
Sbjct: 296 ELLTRHKSTVAEFLSKNYEWFFAEYNSKLLESSNYI 331


>29608.m000205 Calcium-binding protein, putative
          Length = 351

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 30/36 (83%), Gaps = 3/36 (8%)

Query: 1   ELLTRHKSTVAGFLSKNYDW---DFNSKLLESQSYI 33
           ELLTRHKSTVA FLS NY+W   ++N++LL+S +YI
Sbjct: 191 ELLTRHKSTVAEFLSLNYEWFFEEYNTQLLQSSNYI 226