Jatropha Genome Database

JcCB1003421.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB1003421.10 - phase: 0 /pseudo/partial
         (115 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29696.m000106 actin binding protein, putative                         134   6e-33
29848.m004543 DNA binding protein, putative                           120   1e-28
30138.m004035 conserved hypothetical protein                          104   1e-23
29827.m002590 conserved hypothetical protein                           95   6e-21
27866.m000235 conserved hypothetical protein                           46   3e-06
29661.m000911 conserved hypothetical protein                           46   3e-06

>29696.m000106 actin binding protein, putative
          Length = 1191

 Score =  134 bits (338), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/69 (94%), Positives = 68/69 (98%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLK++MQTILSLGNAL
Sbjct: 928 MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKKVMQTILSLGNAL 987

Query: 61  NQGTARGKS 69
           NQGTARG +
Sbjct: 988 NQGTARGSA 996


>29848.m004543 DNA binding protein, putative
          Length = 1266

 Score =  120 bits (301), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/69 (82%), Positives = 64/69 (92%)

Query: 1    MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
            M+VPRVESKLRVFSFK+QFH QVSDLR++LNVVNS AEE+R+S KLKRIMQTILSLGNAL
Sbjct: 999  MKVPRVESKLRVFSFKLQFHPQVSDLRRNLNVVNSAAEEVRSSRKLKRIMQTILSLGNAL 1058

Query: 61   NQGTARGKS 69
            N GTARG +
Sbjct: 1059 NHGTARGSA 1067


>30138.m004035 conserved hypothetical protein
          Length = 1550

 Score =  104 bits (259), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/69 (71%), Positives = 59/69 (85%)

Query: 1    MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
            M+VPRVESKLRVFSFK+QF+SQ+S+ +KSLN VNS  EE+R+S KLK IM+ IL LGN L
Sbjct: 1294 MKVPRVESKLRVFSFKIQFNSQISEFKKSLNTVNSACEEVRSSLKLKEIMRFILILGNTL 1353

Query: 61   NQGTARGKS 69
            NQGTARG +
Sbjct: 1354 NQGTARGSA 1362


>29827.m002590 conserved hypothetical protein
          Length = 231

 Score = 95.1 bits (235), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 56/69 (81%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           M+VPRVE+KLRVF+F++ F SQV DLR +L  +N    E++ S KL++IMQTIL+LGNAL
Sbjct: 125 MKVPRVEAKLRVFAFRITFSSQVDDLRCNLKTINDATREVKESVKLRQIMQTILTLGNAL 184

Query: 61  NQGTARGKS 69
           NQGTARG +
Sbjct: 185 NQGTARGSA 193


>27866.m000235 conserved hypothetical protein
          Length = 1140

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 40/73 (54%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           + VP    ++    +   F S+V  L++S   + +  EE+RNS    ++++ +L  GN +
Sbjct: 840 LDVPFAFKRVDAMLYITNFESEVEYLKRSFETLEAACEELRNSRMFLKLLEAVLKTGNRM 899

Query: 61  NQGTARGKSNFYQ 73
           N GT RG ++ ++
Sbjct: 900 NVGTNRGDAHAFK 912


>29661.m000911 conserved hypothetical protein
          Length = 903

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 40/73 (54%)

Query: 1   MQVPRVESKLRVFSFKMQFHSQVSDLRKSLNVVNSTAEEIRNSAKLKRIMQTILSLGNAL 60
           + +P    ++    ++  F ++V  LRKS   +   +EE++NS    ++++ +L  GN +
Sbjct: 606 LDIPFAFRRVEAMLYRANFDTEVKYLRKSFQTLEVASEELKNSRLFLKLLEAVLRTGNRM 665

Query: 61  NQGTARGKSNFYQ 73
           N GT RG +  ++
Sbjct: 666 NVGTNRGDAKAFK 678