Jatropha Genome Database

JcCB0984411.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0984411.10 + phase: 2 /partial
         (88 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28124.m000247 Early nodulin 55-2 precursor, putative                   67   2e-12
29684.m000318 Early nodulin 55-2 precursor, putative                   50   2e-07

>28124.m000247 Early nodulin 55-2 precursor, putative
          Length = 168

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 29/55 (52%), Positives = 41/55 (74%), Gaps = 1/55 (1%)

Query: 5  KKKIARLVIVVAVMMILKGADCELIKIGKSGWIPNYNYTEWLSQNPEQFHVGDWL 59
          K++IA +++    +MI K A+  L+KIG+ GWIP+YNYTEWL+Q    F+VGDWL
Sbjct: 4  KRRIAGMIMAAMAVMI-KCAESRLLKIGERGWIPDYNYTEWLNQRHNHFYVGDWL 57


>29684.m000318 Early nodulin 55-2 precursor, putative
          Length = 179

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 41/62 (66%), Gaps = 5/62 (8%)

Query: 1  ESSVKKKIARL-VIVVAVMMILKGADCELIKI--GKSGWIPNYNYTEWLSQNPEQFHVGD 57
          E  V +KI  L ++VVAVMMI+KG   E+  +  GK  W PN N+++W S++   F+VGD
Sbjct: 2  EYQVLRKIVILSLVVVAVMMIMKGVKGEVYYVGGGKQAWHPNLNFSDWSSRH--HFYVGD 59

Query: 58 WL 59
          WL
Sbjct: 60 WL 61