Jatropha Genome Database

JcCB0971961.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0971961.10 - phase: 0 
         (138 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29579.m000199 NADH-ubiquinone oxidoreductase, putative                203   2e-53

>29579.m000199 NADH-ubiquinone oxidoreductase, putative
          Length = 744

 Score =  203 bits (517), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/140 (75%), Positives = 111/140 (79%), Gaps = 2/140 (1%)

Query: 1   MGLGILASRVIRPHATKPRN-LLLLRSIVTKPELQSXXXXXXXXXXXXXXXXXXXXX-XX 58
           MGLG+LASR+I+P  + PRN L LLRSIVTKPELQS                        
Sbjct: 1   MGLGLLASRLIKPRTSNPRNHLFLLRSIVTKPELQSPESSAAAAAAEPIPDLGPPRTPVG 60

Query: 59  GARVHFPNPDDAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCL 118
           GARVHFPNP+DAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCL
Sbjct: 61  GARVHFPNPEDAIEVFVDGYPVKIPKGMTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCL 120

Query: 119 VEVEKSPKPVASCAMPALPG 138
           VEVEKSPKPVASCAMPALPG
Sbjct: 121 VEVEKSPKPVASCAMPALPG 140