Jatropha Genome Database

JcCB0942771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0942771.10 + phase: 0 /pseudo/partial
         (59 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28327.m000358 Chorismate synthase, chloroplast precursor, putative     76   3e-15
33560.m000021 chorismate synthase, putative                            45   8e-06

>28327.m000358 Chorismate synthase, chloroplast precursor, putative
          Length = 435

 Score = 76.3 bits (186), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/42 (90%), Positives = 41/42 (97%)

Query: 1   MKYGVRAVKGGGRSSARETIGRVAPGAIAKKILKQFSGTEVV 42
           MKYGVR+V+GGGRSSARETIGRVA GAIAKKILKQFSGTEV+
Sbjct: 160 MKYGVRSVQGGGRSSARETIGRVASGAIAKKILKQFSGTEVL 201


>33560.m000021 chorismate synthase, putative
          Length = 276

 Score = 45.1 bits (105), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/33 (60%), Positives = 26/33 (78%)

Query: 1   MKYGVRAVKGGGRSSARETIGRVAPGAIAKKIL 33
           +KYG+R  +GGGRSSARET  RVA G IA+ ++
Sbjct: 145 VKYGIRDYRGGGRSSARETAARVAAGGIARLVV 177