Jatropha Genome Database

JcCB0907471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0907471.10 - phase: 2 /partial
         (85 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30068.m002596 Ubiquitin carboxyl-terminal hydrolase, putative         133   2e-32
28515.m000319 Ubiquitin carboxyl-terminal hydrolase, putative          51   1e-07

>30068.m002596 Ubiquitin carboxyl-terminal hydrolase, putative
          Length = 938

 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 60/85 (70%), Positives = 73/85 (85%)

Query: 1   WYASWEKYVGQGSDDLLVDGQSPDSQDFHVAPSGMADRPGPINNSEIVENGSGGESDDLE 60
           W+A W++YVGQG++  LVDGQ  DSQ  HV P  +ADRPGPI+NS++V+NGS  E+DDLE
Sbjct: 53  WFAGWQRYVGQGNNSHLVDGQPSDSQHLHVVPLTVADRPGPIDNSDLVQNGSNIEADDLE 112

Query: 61  LARTLLEGRDYVLVPQKVWEKLVQW 85
           L+RTLLEGRDYVLVPQKVW+KLVQW
Sbjct: 113 LSRTLLEGRDYVLVPQKVWDKLVQW 137


>28515.m000319 Ubiquitin carboxyl-terminal hydrolase, putative
          Length = 942

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 6/88 (6%)

Query: 1   WYASWEKYVGQGSDDLLVDGQSPDSQDFHVAPSGMADRPGPINNSEIVENGSGGESDD-- 58
           W+  W +YV     +   DG S      +    G + +P  I+NS+++ + +  +     
Sbjct: 49  WWQHWIEYVNHEQPNTANDGSSSTE---YCDLVGSSKKPASIDNSDLIYDATTIDDSHVA 105

Query: 59  -LELARTLLEGRDYVLVPQKVWEKLVQW 85
            +E+  +LLEGRDYVL+PQ+VW++L  W
Sbjct: 106 GIEVHDSLLEGRDYVLLPQEVWKQLYSW 133