Jatropha Genome Database

JcCB0902911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0902911.10 - phase: 1 /partial
         (100 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29610.m000406 adenylosuccinate lyase, putative                        156   2e-39

>29610.m000406 adenylosuccinate lyase, putative
          Length = 473

 Score =  156 bits (394), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/97 (81%), Positives = 84/97 (86%), Gaps = 10/97 (10%)

Query: 2   QVKWLLKLSQIAEVIEVPNFSEEAQSFLQGLIDGFSLDDALEVKNIEKVTNHDVKAVEYF 61
           +VKWLLKLSQI EV EVPNFS+EAQS+LQGLIDGFS+DDALEVKNIEKVTNHDVKAVEYF
Sbjct: 45  EVKWLLKLSQIPEVTEVPNFSDEAQSYLQGLIDGFSMDDALEVKNIEKVTNHDVKAVEYF 104

Query: 62  LKKKCQSHPEIAK----------SEDINNLAHALMLK 88
           LKKKCQSH EI+K          SEDINNLAHALMLK
Sbjct: 105 LKKKCQSHSEISKVLEFFHFACTSEDINNLAHALMLK 141