Jatropha Genome Database

JcCB0902641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0902641.10 - phase: 0 /pseudo/partial
         (104 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29830.m001431 GTP binding protein, putative                            87   1e-18

>29830.m001431 GTP binding protein, putative
          Length = 779

 Score = 87.4 bits (215), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/67 (67%), Positives = 55/67 (82%)

Query: 3   DLQDALAHRDKELAERDAALNNSKKQIKSIEIKLDSANARHQLEKEAWETNLQNLEESWK 62
           DLQDALA  DKE+AERDAA+  +K+QI +IE K+DSANARHQLEKEA E NLQNLEE+W+
Sbjct: 507 DLQDALADCDKEVAERDAAIIEAKQQINNIEKKIDSANARHQLEKEALEINLQNLEETWR 566

Query: 63  CNISMIN 69
             +S + 
Sbjct: 567 NQLSFLT 573