Jatropha Genome Database

JcCB0897851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0897851.10 + phase: 0 /pseudo/partial
         (117 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003377 neurobeachin, putative                                  114   7e-27

>29889.m003377 neurobeachin, putative
          Length = 1575

 Score =  114 bits (286), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 54/64 (84%), Positives = 58/64 (90%)

Query: 1    MNKPEPVQSWSALALIDCLSTLDGLVSFLPREMVVKELIEGKSCLHVAVLMQTNLEIPVL 60
            MNKPEPVQSWSALALIDCLSTLDGLV+FLP E+V KELIE +SCLHV VLMQTNLEIPVL
Sbjct: 1015 MNKPEPVQSWSALALIDCLSTLDGLVAFLPSEVVAKELIEDRSCLHVTVLMQTNLEIPVL 1074

Query: 61   QFVS 64
            Q  +
Sbjct: 1075 QVAA 1078