Jatropha Genome Database

JcCB0896111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0896111.10 - phase: 0 
         (79 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27504.m000635 conserved hypothetical protein                          119   3e-28
29917.m001999 conserved hypothetical protein                           88   1e-18

>27504.m000635 conserved hypothetical protein
          Length = 101

 Score =  119 bits (297), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 67/79 (84%), Gaps = 1/79 (1%)

Query: 1  MGFSGKPQVDNGLELDCKKWVIAGIPLRAPLKKIYTNP-VDKESESDHDCSTTPTSEESR 59
          MGFSGK QVDNGLELD KKWVIAGIPLRAPLK IYT P V+KES+ + +CSTTPTSE++R
Sbjct: 1  MGFSGKTQVDNGLELDSKKWVIAGIPLRAPLKPIYTKPVVEKESDQNDECSTTPTSEQAR 60

Query: 60 ISARLTCPPAPKKRKGYVE 78
            ARL CPPAPKKRK  ++
Sbjct: 61 TPARLMCPPAPKKRKATLK 79


>29917.m001999 conserved hypothetical protein
          Length = 110

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 56/79 (70%), Gaps = 5/79 (6%)

Query: 1  MGFSGKPQVDNGLELDCKKWVIAGIPLRAPLKKIYTNPVDKESESDHD-----CSTTPTS 55
          MGFS K QVD+GL+ + KKWVIAGI +R  LK I T P  K SE+  D     CSTTPT+
Sbjct: 1  MGFSKKSQVDSGLDSEGKKWVIAGIAIRTSLKPISTRPRAKASENGDDSEEEQCSTTPTA 60

Query: 56 EESRISARLTCPPAPKKRK 74
          +ESRI  RL CPPAP+KR+
Sbjct: 61 KESRIPERLPCPPAPRKRR 79