Jatropha Genome Database

JcCB0894111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0894111.10 - phase: 2 /partial
         (233 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001073 nucleic acid binding protein, putative                  177   3e-45
30170.m014220 nucleic acid binding protein, putative                   63   1e-10

>29646.m001073 nucleic acid binding protein, putative
          Length = 520

 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/243 (48%), Positives = 130/243 (53%), Gaps = 12/243 (4%)

Query: 1   ITHRAFCDALAEESARA-TQTXXXXXXXXXXXXXQESEPKVQVDXXXXXXXXXXXXXXXX 59
           ITHRAFCDALAEESAR                    SE +++VD                
Sbjct: 168 ITHRAFCDALAEESARGQPPASNPNPNPNPAAATSNSETELKVDPTPPQQPPPPPPPAAV 227

Query: 60  XXXXXXQSAGVISS--------SISPNHSPELPDNPSPIIEEALAPQXXXXXXXXXXXXX 111
                  SA  + S        S+SP HSPELP NP+PI+EEA A               
Sbjct: 228 VVAPATVSAPPVLSQSAAVISSSVSPIHSPELPGNPTPIVEEAPAQAPAPAPLPACLNGS 287

Query: 112 XXXXXXXXXXXXXXXXXXXX--XXXXXXXXIQPPQTPAFTDLIRAMAHPDRPADLAPPSS 169
                                         +QPPQTPAFTDLIRAM+ P+RP DL PPS 
Sbjct: 288 CSSSTSSSSNGSTSNGVFASLFASSTASGSLQPPQTPAFTDLIRAMSRPERPTDL-PPSC 346

Query: 170 TEPISLCLSTSHGSSIFGTAGQERRQYAPPPQPAMSATALLQKAAQIGAAATNASLLRGF 229
            EPISLCLST+HGSSIFGT GQER QYAPP QPAMSATALLQKAAQ+G AATNASLLRG 
Sbjct: 347 NEPISLCLSTTHGSSIFGTGGQERSQYAPPRQPAMSATALLQKAAQMGPAATNASLLRGL 406

Query: 230 GIV 232
           GIV
Sbjct: 407 GIV 409


>30170.m014220 nucleic acid binding protein, putative
          Length = 502

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 4/94 (4%)

Query: 142 PPQTPAFTDLIRAMAHPDRPADLAPPSSTEPISLCLSTSHGSSIFGTAG----QERRQYA 197
           P  +P+F++L+ A  H D  A ++ P + EP SL LS+S   S   ++      + R Y 
Sbjct: 299 PSSSPSFSNLLSAFTHSDCAATMSTPRAVEPPSLSLSSSLYLSSNASSLFPDQDQHRHYT 358

Query: 198 PPPQPAMSATALLQKAAQIGAAATNASLLRGFGI 231
               PAMSATALLQKAAQ+GA+++NAS LRG G+
Sbjct: 359 QSSLPAMSATALLQKAAQMGASSSNASFLRGLGL 392