Jatropha Genome Database

JcCB0892281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0892281.10 - phase: 0 /pseudo/partial
         (80 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29593.m000174 conserved hypothetical protein                          104   9e-24

>29593.m000174 conserved hypothetical protein
          Length = 500

 Score =  104 bits (260), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 48/64 (75%), Positives = 55/64 (85%)

Query: 4   SCKYGATCRYNHPDRNAINPPAAAISHPIVANPAANLNIGVINPAASLYQTIDPRLAQPM 63
           SCKYGATCRYNHPDRNAINPPAAAI HP++A+PAANLN+G INPAAS+YQ I P  + PM
Sbjct: 321 SCKYGATCRYNHPDRNAINPPAAAIGHPLLASPAANLNLGDINPAASIYQAIYPSFSSPM 380

Query: 64  VWVN 67
           + V 
Sbjct: 381 LGVG 384