Jatropha Genome Database

JcCB0890131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0890131.10 - phase: 2 /partial
         (379 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

55107.m000015 hypothetical protein                                    136   2e-32

>55107.m000015 hypothetical protein
          Length = 459

 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 76/142 (53%), Positives = 93/142 (65%), Gaps = 2/142 (1%)

Query: 18  NKRKREKSLWGSLPFSMTQKGTDESEAVWSNIADACVVEGQDCIGTSMPRNEGGKHSDTP 77
           NKRKR+K LWGSLP SMT+K  D+SEA  SNI  A V E +     S+  NE  ++SD  
Sbjct: 292 NKRKRKKLLWGSLPISMTEKENDDSEAGGSNIDKAHVCEVKIYCRRSIEGNER-EYSDDL 350

Query: 78  MKNPDTDFCQIGDLVGCSVRDLMRRKRCHRIAQQECGNSGVKKVCAVGEHEPDNILMPNQ 137
           MKN  T  C++G LVG SVRDLMRRKRC RI QQ+    G KKVC+ GEHE   +L+P Q
Sbjct: 351 MKNSGTGICEVGGLVGSSVRDLMRRKRCRRIPQQDDNPDGAKKVCSRGEHEQGKVLLPEQ 410

Query: 138 LDLHAVN-EEHGNKPLGSANFR 158
           LD  A + ++H  KPLG  + R
Sbjct: 411 LDFLARHGDKHDGKPLGYVDLR 432