Jatropha Genome Database

JcCB0888501.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0888501.10 + phase: 0 /pseudo/partial
         (61 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29598.m000471 calcium ion binding protein, putative                    74   2e-14

>29598.m000471 calcium ion binding protein, putative
          Length = 327

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/42 (83%), Positives = 39/42 (92%)

Query: 19  TDLDKEDKGKISKGEIRDALVHMGVEMGIPPFKEFPLLNDIL 60
           T+LD EDKGKISK EIR+ALV+MGVEMGIPPF+E PLLNDIL
Sbjct: 130 TELDIEDKGKISKCEIRNALVNMGVEMGIPPFEELPLLNDIL 171