Jatropha Genome Database

JcCB0860891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0860891.10 - phase: 0 /partial
         (78 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006203 30S ribosomal protein S13, putative                      51   1e-07

>29908.m006203 30S ribosomal protein S13, putative
          Length = 290

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 3   ENIKIKEFSKYQIDQIEQMIGQDHVVHWELKRGERADIEGLISISCYRGIRHQDGLPLRG 62
           EN + K+ +  ++  +   + + +++  EL R  R+DI+ L  I CYRG  H   LP RG
Sbjct: 74  ENKRTKDLTGLELHTLRNEVSK-YLIGEELTRCVRSDIQRLADIQCYRGYNHACLLPCRG 132

Query: 63  QQTHTNART 71
           Q T TNART
Sbjct: 133 QLTRTNART 141



 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 3   ENIKIKEFSKYQIDQIEQMIGQDHVVHWELKRGERADIEGLISISCYRGIRHQDGLPLRG 62
           EN   KE S+ ++  +   + + +++  +L+R    +I  L  I CYRG+RH  GLP RG
Sbjct: 207 ENKITKELSEEELITLRDEVSK-YMIEGDLRRFNALNIRRLKEIQCYRGVRHIQGLPCRG 265

Query: 63  QQTHTNART 71
           Q+T  N RT
Sbjct: 266 QRTKNNCRT 274