Jatropha Genome Database

JcCB0838301.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0838301.10 + phase: 2 /partial
         (51 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30075.m001171 3-hydroxyisobutyrate dehydrogenase, putative             61   1e-10

>30075.m001171 3-hydroxyisobutyrate dehydrogenase, putative
          Length = 388

 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 33/45 (73%)

Query: 1   DSYNPVPGVMQGVPASRDYTGGFSSKLMVGGLSLHLLIFKCVSRT 45
           DSYNPVPGVM+GVPASR+Y GGF+SKLM   L+L     K V  T
Sbjct: 306 DSYNPVPGVMEGVPASRNYAGGFASKLMTKDLNLAAASAKAVDFT 350