Jatropha Genome Database

JcCB0836821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0836821.10 + phase: 0 
         (115 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29269.m000246 protein translocase, putative                           182   2e-47

>29269.m000246 protein translocase, putative
          Length = 159

 Score =  182 bits (463), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 86/115 (74%), Positives = 95/115 (82%)

Query: 1   MDPSEIRYLEDDDTPIKKTIKGATMGLVAGTIWGTVVATWYDVPRVEKHVALPGLIRTVK 60
           MDPSE+RYLED+DTP  KTIKGATMGL AGT+WGT+VATW+DVPRVEKHVALPGLIRTVK
Sbjct: 1   MDPSELRYLEDNDTPTMKTIKGATMGLAAGTLWGTIVATWHDVPRVEKHVALPGLIRTVK 60

Query: 61  MMGNYGATFAAIGGVYIGVEQLVQHYRMKRDXXXXXXXXXXXXXSILGFKGEEDS 115
           MMGNYG TFAAIGGVYIGVEQL+QH+RMKRD             S++GFKG   S
Sbjct: 61  MMGNYGLTFAAIGGVYIGVEQLIQHFRMKRDFVNGTVGGFVAGASVIGFKGRSIS 115