Jatropha Genome Database

JcCB0836121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0836121.10 + phase: 1 /partial
         (65 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013950 conserved hypothetical protein                           81   1e-16

>30147.m013950 conserved hypothetical protein
          Length = 535

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 42/51 (82%)

Query: 2  ELAQPTNEIQQPAREEATKQSPPSVFVNSEPMREDQVQNAVKISFTPKKLG 52
          E AQPTNEIQQ AREE TKQSPPSVFVNSEPMREDQVQNAVK    PK  G
Sbjct: 23 EAAQPTNEIQQQAREEVTKQSPPSVFVNSEPMREDQVQNAVKFLSHPKVRG 73