Jatropha Genome Database

JcCB0833551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0833551.10 - phase: 0 /pseudo/partial
         (174 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29745.m000373 glycerol-3-phosphate dehydrogenase, putative            160   2e-40

>29745.m000373 glycerol-3-phosphate dehydrogenase, putative
          Length = 631

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 76/86 (88%), Positives = 81/86 (94%)

Query: 48  MAEDAVDAAVKSGKLSPTNECSTQNLRLIGGDGWEPSSFTVLAQQYVRMKRSYGGKVVPG 107
           MAEDAVDAA+KSGKLSP+N C TQNL L+GGDGWEPSSFTVLAQQY RMK++YGGKVVPG
Sbjct: 448 MAEDAVDAAIKSGKLSPSNGCVTQNLSLVGGDGWEPSSFTVLAQQYKRMKKTYGGKVVPG 507

Query: 108 VMDTAAAKHLSHAYGTMAERVAAIAQ 133
            MDTAAAKHLSHAYGTMAERVAAIAQ
Sbjct: 508 AMDTAAAKHLSHAYGTMAERVAAIAQ 533