Jatropha Genome Database

JcCB0827591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0827591.10 - phase: 0 
         (112 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27504.m000633 alanine aminotransferase, putative                      116   3e-27

>27504.m000633 alanine aminotransferase, putative
          Length = 452

 Score =  116 bits (290), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/112 (56%), Positives = 68/112 (60%), Gaps = 29/112 (25%)

Query: 1   MTDGFNSCRNVVCNFTEGAMYSFPQIRLPPKAIEAAKRLGKVPDVFYCLKLLEATGISTV 60
           MTDGFNSCRNVVCNFTEGAMYSF           +  R+        C            
Sbjct: 370 MTDGFNSCRNVVCNFTEGAMYSF--------LXXSWFRIWTERRALPCR----------- 410

Query: 61  PGSGFGQKEGVFHLRTTILPAEEEMPAIMSSFKKFNDEFMEQYEDHTGYSRM 112
                     VFHLRTTILPAEE+MPAIM+SFKKFNDEFME+YEDH GYSRM
Sbjct: 411 ----------VFHLRTTILPAEEDMPAIMASFKKFNDEFMEEYEDHRGYSRM 452